STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000032821Si:ch211-246m6.4. (219 aa)    
Predicted Functional Partners:
ENSCHAP00000001463
annotation not available
    
 0.637
ENSCHAP00000016407
annotation not available
    
 0.637
TCF4
Transcription factor 4.
    
 0.637
tcf12
Transcription factor 12.
    
 0.637
ldb1
LIM domain binding 1.
    
 0.586
ENSCHAP00000039961
annotation not available
    
 0.586
ENSCHAP00000056531
LIM domain binding 2b.
    
 0.586
runx2
RUNX family transcription factor 2.
    
 0.467
ENSCHAP00000021090
RUNX family transcription factor 2b.
    
 0.467
LOC105896069
Runt-related transcription factor 3-like.
    
 0.467
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.