STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebf1EBF transcription factor 1. (591 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.761
ENSCHAP00000017615
YOD1 deubiquitinase.
    
   0.749
plaa
Phospholipase A2 activating protein.
    
   0.749
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
    
 0.622
LOC105901173
Transitional endoplasmic reticulum ATPase.
    
 0.622
SPATA5
Spermatogenesis associated 5.
    
 0.618
eef1g
Eukaryotic translation elongation factor 1 gamma.
    
   0.527
ENSCHAP00000033279
Cytochrome b5 reductase 4.
    
 0.511
cebpb
CCAAT enhancer binding protein beta.
     
 0.501
dolk
Dolichol kinase.
    
   0.493
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.