STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000033012RNA binding motif protein 11. (156 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
   0.863
rps12
Ribosomal protein S12.
    
 
 0.801
rps2
Ribosomal protein S2.
    
   0.757
rpl23a
Ribosomal protein L23a.
    
   0.757
ENSCHAP00000004239
RAD50 interactor 1.
   
    0.718
fkbp1a
FKBP prolyl isomerase 1A.
   
 
 0.712
fkbp3
FKBP prolyl isomerase 3.
   
 
 0.712
fkbp1b
FKBP prolyl isomerase 1B.
   
 
 0.712
prim1
DNA primase subunit 1.
   
    0.696
rpl17
Ribosomal protein L17.
    
   0.688
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.