STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDF2Rhomboid 5 homolog 2. (843 aa)    
Predicted Functional Partners:
ENSCHAP00000019696
ADAM metallopeptidase domain 17b.
    
 0.616
LOC105897267
Disintegrin and metalloproteinase domain-containing protein 17-like.
    
 0.616
mthfs
Methenyltetrahydrofolate synthetase.
  
    0.579
stoml1
Stomatin like 1.
  
 0.471
LOC105892433
Disintegrin and metalloproteinase domain-containing protein 10-like.
    
 0.466
ENSCHAP00000033114
ADAM metallopeptidase domain 10a.
    
 0.466
PHB2
Prohibitin 2.
  
 0.466
ENSCHAP00000006944
Methyltransferase like 23.
    
 
 0.439
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
    
 0.433
ENSCHAP00000000517
annotation not available
  
 0.427
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.