STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
patl1PAT1 homolog 1, processing body mRNA decay factor. (766 aa)    
Predicted Functional Partners:
lsm1
LSM1 homolog, mRNA degradation associated.
    
 0.993
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.990
ENSCHAP00000038398
Decapping mRNA 2.
    
 0.988
lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.987
cnot1
CCR4-NOT transcription complex subunit 1.
    
 0.985
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
  0.985
ENSCHAP00000051248
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.984
cnot8
CCR4-NOT transcription complex subunit 8.
    
 0.972
LOC105912767
CCR4-NOT transcription complex subunit 7.
    
 0.972
cnot3
CCR4-NOT transcription complex subunit 3.
   
 0.972
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.