STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000033421Tetratricopeptide repeat domain 8. (517 aa)    
Predicted Functional Partners:
bbs2
Bardet-Biedl syndrome 2.
  
 0.998
bbs9
Bardet-Biedl syndrome 9.
  
 
 0.998
bbs7
Bardet-Biedl syndrome 7.
  
 0.998
ENSCHAP00000051136
Bardet-Biedl syndrome 4.
  
0.998
bbs1
Bardet-Biedl syndrome 1.
   
 0.998
ENSCHAP00000012634
BBSome interacting protein 1.
    
 0.993
ENSCHAP00000056813
Bardet-Biedl syndrome 5.
  
 0.992
ENSCHAP00000014797
Kinesin family member 25.
   
 0.964
ENSCHAP00000030335
Si:ch211-257p13.3.
   
 0.964
ENSCHAP00000050713
Kinesin family member C3.
   
 0.964
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.