STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000033432Bassoon (presynaptic cytomatrix protein) b. (3915 aa)    
Predicted Functional Partners:
ENSCHAP00000040395
Piccolo presynaptic cytomatrix protein a.
  
0.653
ENSCHAP00000030702
annotation not available
   
0.631
fads2
Fatty acid desaturase 2.
     
 0.614
tecr
trans-2,3-enoyl-CoA reductase.
    
 0.597
ENSCHAP00000034941
trans-2,3-enoyl-CoA reductase-like 2b.
    
 0.597
LOC105889329
Very-long-chain enoyl-CoA reductase-like.
    
 0.597
LOC105910973
Very-long-chain enoyl-CoA reductase-like.
    
 0.597
ENSCHAP00000033279
Cytochrome b5 reductase 4.
    
 0.591
ENSCHAP00000002666
stearoyl-CoA desaturase b.
    
 0.582
SCD5
stearoyl-CoA desaturase 5.
    
 0.582
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.