STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000033668TEF transcription factor, PAR bZIP family member b. (385 aa)    
Predicted Functional Partners:
LOC105912624
Cytochrome c oxidase subunit 5A, mitochondrial-like.
   
 0.824
COX5A
Cytochrome c oxidase subunit 5A, mitochondrial-like.
   
 0.824
ENSCHAP00000019163
Cytochrome c oxidase subunit 5B2.
   
 0.812
COX5B
Cytochrome c oxidase subunit 5B, mitochondrial-like.
   
 0.812
ENSCHAP00000036147
Cytochrome c oxidase subunit 7C.
   
 0.809
LOC105897668
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.774
ENSCHAP00000042805
Cytochrome c oxidase subunit 6A1.
   
 0.774
ENSCHAP00000000854
Cytochrome c oxidase subunit 6B2.
   
 0.741
LOC105903307
Cytochrome c oxidase subunit 6B1.
   
 0.741
ENSCHAP00000018632
Cytochrome c oxidase assembly factor 6.
   
 0.741
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.