STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105909712Calpain small subunit 1-like. (271 aa)    
Predicted Functional Partners:
ENSCHAP00000061257
Calpastatin.
   
 0.953
capn7
Calpain 7.
   
 0.879
ENSCHAP00000012471
Calpain 15.
   
 0.862
ENSCHAP00000004824
annotation not available
 
 
 0.845
ENSCHAP00000016983
Calpain 5b.
 
 
 0.840
ENSCHAP00000009363
annotation not available
 
 
 0.827
ENSCHAP00000004240
annotation not available
 
 
 0.823
ENSCHAP00000004452
annotation not available
 
 
 0.823
ENSCHAP00000003953
annotation not available
 
 
 0.821
ENSCHAP00000031565
annotation not available
 
 
 0.821
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.