STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smpdl3aSphingomyelin phosphodiesterase acid like 3A. (446 aa)    
Predicted Functional Partners:
ENSCHAP00000002441
Von Willebrand factor D and EGF domains.
      
 0.542
ENSCHAP00000009375
Bone morphogenetic protein/retinoic acid inducible neural-specific 1.
      
 0.542
ENSCHAP00000023694
Sulfide quinone oxidoreductase.
      
 0.535
cdc40
Cell division cycle 40.
      
 0.522
ENSCHAP00000032732
Si:ch211-246m6.5.
      
 0.517
npc2
NPC intracellular cholesterol transporter 2.
   
 
  0.516
ENSCHAP00000012516
Cathepsin H.
   
    0.410
BTBD10
BTB domain containing 10.
      
 0.408
BTBD10-2
BTB domain containing 10.
      
 0.408
ENSCHAP00000015410
BTB (POZ) domain containing 10a.
      
 0.408
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.