STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000033944Rho/rac guanine nucleotide exchange factor (GEF) 18b. (987 aa)    
Predicted Functional Partners:
LOC105908082
Transforming protein RhoA.
   
 0.925
LOC105893671
Transforming protein RhoA-like.
   
 0.909
LOC105890655
Transforming protein RhoA-like.
   
 0.909
LOC105904931
Transforming protein RhoA-like.
   
 0.891
RHOB
Rho-related GTP-binding protein RhoB.
   
 0.891
ENSCHAP00000031110
Cingulin b.
     
 0.839
ENSCHAP00000015563
Erythrocyte membrane protein band 4.1 like 4A.
     
 0.825
LOC105900164
Transforming protein RhoA-like.
   
 0.764
ENSCHAP00000016490
Intersectin 2b.
    
0.681
ENSCHAP00000057857
Intersectin 2a.
    
0.681
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.