STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105902747T-box-containing protein TBX6L-like. (475 aa)    
Predicted Functional Partners:
ENSCHAP00000018952
Mesogenin 1.
   
 0.767
ENSCHAP00000035909
annotation not available
    
 0.626
ENSCHAP00000027658
Notochord homeobox.
   
 
 0.510
ENSCHAP00000042598
annotation not available
   
 
 0.510
wnt3a
Wnt family member 3A.
    
 0.502
LOC105888818
Proto-oncogene Wnt-3.
    
 0.502
ENSCHAP00000032910
Mesenchyme homeobox 1.
    
 
 0.453
RING1
Ring finger protein 1.
    
  0.452
rnf2
Ring finger protein 2.
    
  0.452
ENSCHAP00000048127
NK2 homeobox 5.
    
 
 0.445
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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