STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105902344TBC1 domain family member 12-like. (962 aa)    
Predicted Functional Partners:
ENSCHAP00000010379
Unc-51 like autophagy activating kinase 1a.
    
  0.680
ENSCHAP00000020142
Unc-51 like autophagy activating kinase 1.
    
  0.680
ENSCHAP00000030416
Unc-51 like autophagy activating kinase 2.
    
  0.680
rab11a
RAB11A, member RAS oncogene family.
    
 0.678
LOC105891875
Ras-related protein Rab-11A-like.
    
 0.678
LOC105889693
Ras-related protein Rab-11B-like.
    
 0.678
LOC105900968
Ras-related protein Rab-11B-like.
    
 0.678
trappc8
Trafficking protein particle complex 8.
    
 
 0.669
ENSCHAP00000016303
RAB25, member RAS oncogene family b.
    
 0.657
rabl2a
RAB, member of RAS oncogene family like 2A.
    
 0.657
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.