STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105900785Ubiquitin-conjugating enzyme E2 variant 3-like. (471 aa)    
Predicted Functional Partners:
vps28
VPS28 subunit of ESCRT-I.
   
 0.996
ENSCHAP00000048636
annotation not available
    
 0.988
ENSCHAP00000005325
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
   
 0.987
ENSCHAP00000003775
Multivesicular body subunit 12Ba.
    
 0.984
ENSCHAP00000012605
Multivesicular body subunit 12Bb.
    
 0.984
ENSCHAP00000020648
Zinc finger, FYVE domain containing 1.
    
 0.981
LOC105909327
Zinc finger FYVE domain-containing protein 1-like.
    
 0.981
ENSCHAP00000041237
annotation not available
    
 0.981
ENSCHAP00000058926
Zinc finger, FYVE domain containing 19.
    
 0.981
vps37c
VPS37C subunit of ESCRT-I.
    
 0.979
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.