STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105901470Thioredoxin-interacting protein-like. (399 aa)    
Predicted Functional Partners:
LOC105903933
Thioredoxin-like.
    
 0.982
TXN
Thioredoxin-like.
    
 0.956
txn2
Thioredoxin 2.
    
 0.940
ENSCHAP00000052732
Itchy E3 ubiquitin protein ligase a.
    
 
 0.930
ENSCHAP00000047655
annotation not available
    
 0.919
txnip
Thioredoxin interacting protein.
  
  
 
0.851
ENSCHAP00000031726
annotation not available
     
 0.773
ENSCHAP00000047229
Protein tyrosine phosphatase non-receptor type 6.
    
   0.684
ptpn11
Protein tyrosine phosphatase non-receptor type 11.
    
   0.684
LOC105898973
Tyrosine-protein phosphatase non-receptor type 11-like.
    
   0.684
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.