STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfsd4bMajor facilitator superfamily domain containing 4B. (624 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.739
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.716
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.716
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.687
ENSCHAP00000016391
Macrophage stimulating 1 receptor b.
    
  0.591
ENSCHAP00000041906
Macrophage stimulating 1 receptor a.
    
  0.591
ENSCHAP00000053649
MET proto-oncogene, receptor tyrosine kinase.
    
  0.591
ENSCHAP00000046663
SMC5-SMC6 complex localization factor 1.
   
 0.578
ENSCHAP00000027391
WD repeat domain 90.
   
 0.544
ENSCHAP00000016350
Fras1 related extracellular matrix 1a.
    
 0.543
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.