STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000034485HID1 domain containing b. (813 aa)    
Predicted Functional Partners:
ENSCHAP00000050956
Ubiquitin specific peptidase 40.
    
 
 0.735
usp7
Ubiquitin specific peptidase 7.
    
 
 0.735
gle1
GLE1 RNA export mediator.
   
 
 0.722
ENSCHAP00000037889
Nucleoporin 155.
    
 
 0.694
ENSCHAP00000048722
Aldehyde dehydrogenase 8 family, member A1.
   
 0.670
aldh16a1
Aldehyde dehydrogenase 16 family member A1.
    
 0.666
ENSCHAP00000044484
Aldehyde dehydrogenase 1 family, member A2.
    
 0.666
ENSCHAP00000046008
Aldehyde dehydrogenase 1 family, member A3.
    
 0.666
ALDH1A1
Aldehyde dehydrogenase 1 family member A1.
    
 0.666
ENSCHAP00000046252
Aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1.
    
 0.666
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.