STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smug1Single-strand-selective monofunctional uracil-DNA glycosylase 1. (282 aa)    
Predicted Functional Partners:
adat3
Adenosine deaminase tRNA specific 3.
   
 0.992
ENSCHAP00000009497
Thymidylate synthetase.
  
 
 0.916
rbks
Ribokinase.
    
 0.889
ENSCHAP00000041850
Thymidine kinase 1, soluble.
    
 0.864
ENSCHAP00000027745
Pseudouridine 5'-phosphatase.
    
  0.828
ENSCHAP00000002935
Zgc:136858.
    
  0.825
dpm1
Dolichyl-phosphate mannosyltransferase subunit 1, catalytic.
     
 0.825
alg5
ALG5 dolichyl-phosphate beta-glucosyltransferase.
     
 0.825
dolk
Dolichol kinase.
     
 0.812
ENSCHAP00000032112
annotation not available
  
 
  0.811
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.