STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm41RNA binding motif protein 41. (480 aa)    
Predicted Functional Partners:
sf3b6
Splicing factor 3b subunit 6.
   
 0.993
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.992
phf5a
PHD finger protein 5A.
   
 0.991
sf3b1
Splicing factor 3b subunit 1.
   
 0.991
ENSCHAP00000035894
Splicing factor 3b, subunit 2.
   
 0.990
ENSCHAP00000012949
Splicing factor 3b, subunit 4.
   
 0.987
zmat5
Zinc finger matrin-type 5.
   
 0.987
snrnp48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
   
 0.985
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.985
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.978
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.