STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000034886S-antigen; retina and pineal gland (arrestin) a. (388 aa)    
Predicted Functional Partners:
ENSCHAP00000060131
Cyclin G associated kinase.
    
  0.982
RHO
Rhodopsin.
   
 0.920
LOC105899021
Rhodopsin.
   
 0.901
LOC105912243
Rhodopsin, deep-sea form.
   
 0.901
ENSCHAP00000026217
Myosin IIIA.
   
 0.868
ENSCHAP00000026726
annotation not available
   
 0.868
ENSCHAP00000032432
annotation not available
   
 0.868
ENSCHAP00000054831
Myosin IIIB.
   
 0.868
LOC105895929
Green-sensitive opsin-2-like.
   
 0.857
LOC105889201
Green-sensitive opsin-2-like.
   
 0.857
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.