STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000035184Coatomer protein complex, subunit zeta 1. (213 aa)    
Predicted Functional Partners:
copa
Coatomer protein complex subunit alpha.
   
 0.993
ENSCHAP00000049229
Coatomer protein complex, subunit gamma 2.
    
 0.992
LOC105906687
Coatomer subunit delta.
   
 0.982
ENSCHAP00000042466
Coatomer protein complex, subunit beta 2.
   
 0.981
cope
Coatomer protein complex subunit epsilon.
   
 0.977
ENSCHAP00000049412
Archain 1b.
   
 0.976
ENSCHAP00000008182
annotation not available
   
 0.972
copb1
Coatomer protein complex subunit beta 1.
   
 0.972
ENSCHAP00000002398
ADP-ribosylation factor GTPase activating protein 3.
    
 0.850
ENSCHAP00000048926
ADP-ribosylation factor GTPase activating protein 2.
    
 0.850
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.