STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000035217Cysteine dioxygenase, type I. (278 aa)    
Predicted Functional Partners:
LOC105908670
Cystathionine beta-synthase-like.
   
 
 0.929
LOC105900485
Glutamate decarboxylase 1-like.
     
 0.889
gad2
Glutamate decarboxylase 2.
     
 0.889
ENSCHAP00000060530
Cysteine sulfinic acid decarboxylase.
     
 0.889
sgpl1
Sphingosine-1-phosphate lyase 1.
     
 0.874
gad1
Glutamate decarboxylase 1.
     
 0.871
ENSCHAP00000053176
Glutamate decarboxylase 1a.
     
 0.871
GOT2
Aspartate aminotransferase, mitochondrial-like.
     
 0.869
ENSCHAP00000033002
annotation not available
     
 0.868
ENSCHAP00000017230
Glutamate-cysteine ligase, modifier subunit.
   
 
 0.864
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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