STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000035733Usher syndrome 1C. (824 aa)    
Predicted Functional Partners:
ENSCHAP00000034645
Usher syndrome 1Gb (autosomal recessive).
    
 0.970
ENSCHAP00000061915
Usher syndrome 1Ga (autosomal recessive).
    
 0.970
ENSCHAP00000028090
Cadherin-related 23.
   
 
 0.939
ENSCHAP00000028232
annotation not available
   
 
 0.924
ENSCHAP00000016570
Whirlin a.
     
0.904
ENSCHAP00000035554
annotation not available
     
0.904
ENSCHAP00000005025
PDZ domain containing 7a.
     
0.885
PDZD7
PDZ domain containing 7.
     
0.885
ENSCHAP00000019356
Usher syndrome 2A (autosomal recessive, mild).
    
 0.862
myo7a
Myosin VIIA.
   
 0.853
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.