STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psapProsaposin. (560 aa)    
Predicted Functional Partners:
LOC105899436
Galactocerebrosidase-like.
    
 
 0.888
ENSCHAP00000043860
Galactosylceramidase b.
    
 
 0.888
ENSCHAP00000011103
annotation not available
  
  
 
0.859
chid1
Chitinase domain containing 1.
     
 0.840
lamp1
Lysosomal associated membrane protein 1.
   
  
 0.815
ENSCHAP00000017562
Glucosidase, beta, acid.
   
 0.791
ENSCHAP00000047689
Transmembrane protein 130.
   
 0.791
ENSCHAP00000001996
G protein-coupled receptor 37 like 1a.
     
 0.744
ENSCHAP00000011364
annotation not available
     
 0.744
ENSCHAP00000020361
G protein-coupled receptor 37b.
     
 0.744
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.