STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000035975Low density lipoprotein receptor-related protein 1Bb. (4612 aa)    
Predicted Functional Partners:
ENSCHAP00000042752
Low density lipoprotein receptor-related protein associated protein 1.
    
 0.886
LOC105901460
Apolipoprotein Eb-like.
    
 0.865
ENSCHAP00000062024
Agrin.
    
 0.826
LOC105896398
Apolipoprotein Eb-like.
    
 0.822
LOC105902263
Dickkopf-related protein 1-like.
    
 0.801
dkk1
Dickkopf WNT signaling pathway inhibitor 1.
    
 0.801
RELN
Reelin.
    
 0.788
ENSCHAP00000031129
Low density lipoprotein receptor adaptor protein 1b.
    
 0.761
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.758
ENSCHAP00000013590
annotation not available
    
 0.727
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.