STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105889441Procollagen galactosyltransferase 2-like. (606 aa)    
Predicted Functional Partners:
ENSCHAP00000021042
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.887
ENSCHAP00000037330
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.887
plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
0.887
ogfod2
2-oxoglutarate and iron dependent oxygenase domain containing 2.
   
 0.654
ENSCHAP00000056351
Collagen, type VI, alpha 2.
   
 0.580
LOC105912668
Collagen alpha-2(VI) chain-like.
   
 0.580
ENSCHAP00000040789
annotation not available
    
  0.529
ENSCHAP00000007626
Si:dkey-5n18.1.
    
  0.416
ENSCHAP00000018588
annotation not available
    
  0.412
ENSCHAP00000056433
Collagen, type VI, alpha 1.
    
  0.412
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.