STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ocel1occludin/ELL domain containing 1. (556 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
     
 0.939
ENSCHAP00000013195
Cyclin-dependent kinase 9 (CDC2-related kinase).
    
 0.863
ENSCHAP00000052916
MARVEL domain containing 2b.
  
  
 
0.858
ENSCHAP00000000886
Tight junction protein 1b.
    
 0.833
ENSCHAP00000036405
Tight junction protein 1a.
    
 0.833
eaf1
ELL associated factor 1.
    
 0.832
ENSCHAP00000058767
ELL associated factor 2.
    
 0.832
supt5h
SPT5 homolog, DSIF elongation factor subunit.
    
 0.795
polr2k
RNA polymerase II subunit K.
    
  0.781
polr2h
RNA polymerase II subunit H.
    
  0.781
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.