STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000037035Polynucleotide kinase 3'-phosphatase. (591 aa)    
Predicted Functional Partners:
ENSCHAP00000045636
Fucose kinase.
  
 
 0.990
TTF2
Transcription termination factor 2.
  
 
 0.988
xrcc1
X-ray repair cross complementing 1.
   
 0.979
polb
DNA polymerase beta.
    
 0.970
ENSCHAP00000024509
Ligase III, DNA, ATP-dependent.
   
 0.949
gmds
GDP-mannose 4,6-dehydratase.
    
 0.939
med10
Mediator complex subunit 10.
     
 0.934
lig4
DNA ligase 4.
   
 0.925
ccnc
Cyclin C.
   
 
  0.924
med21
Mediator complex subunit 21.
   
 
  0.915
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.