STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000037139Jagged canonical Notch ligand 1b. (1227 aa)    
Predicted Functional Partners:
notch1
Notch receptor 1.
   
0.924
ENSCHAP00000062382
annotation not available
   
0.924
ENSCHAP00000054630
Notch receptor 2.
   
0.915
ENSCHAP00000047167
Notch receptor 3.
   
0.911
ENSCHAP00000030798
Jagged canonical Notch ligand 2b.
  
  
 
0.814
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.739
ENSCHAP00000013899
annotation not available
   
0.724
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.718
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.718
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.706
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.