STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slirpSRA stem-loop interacting RNA binding protein. (100 aa)    
Predicted Functional Partners:
LRPPRC
Leucine rich pentatricopeptide repeat containing.
   
 
 0.949
ndufc1
NADH:ubiquinone oxidoreductase subunit C1.
   
 
  0.896
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.860
TOMM7
Translocase of outer mitochondrial membrane 7.
   
  
 0.846
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.814
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
  0.793
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.786
ndufb2
NADH:ubiquinone oxidoreductase subunit B2.
   
 
  0.765
polr2k
RNA polymerase II subunit K.
   
 0.756
ndufa2
NADH:ubiquinone oxidoreductase subunit A2.
   
 
  0.753
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.