STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh1alkB homolog 1, histone H2A dioxygenase. (379 aa)    
Predicted Functional Partners:
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.827
ENSCHAP00000004481
annotation not available
  
  
 0.596
ENSCHAP00000001297
alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.568
ENSCHAP00000013667
Methyltransferase like 4.
   
  
 0.567
ENSCHAP00000004526
alkB homolog 5, RNA demethylase.
      
 0.559
ENSCHAP00000011007
Afadin, adherens junction formation factor a.
    
  0.557
ENSCHAP00000026154
annotation not available
    
  0.557
ENSCHAP00000044482
tRNA methyltransferase 9B.
   
  
 0.553
alkbh6
alkB homolog 6.
   
  
 0.547
jmjd4
Jumonji domain containing 4.
   
  
 0.547
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.