STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105911018PHD finger protein 13-like. (394 aa)    
Predicted Functional Partners:
mcrs1
Microspherule protein 1.
    
 0.890
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.873
ENSCHAP00000003527
Testis expressed 30.
    
 0.833
kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.833
ENSCHAP00000010428
SIN3 transcription regulator family member B.
    
 0.802
ENSCHAP00000061580
SIN3 transcription regulator family member Ab.
    
 0.802
ENSCHAP00000000832
Transducin beta like 1 X-linked.
    
 0.776
TBL1XR1
Transducin beta like 1 X-linked receptor 1.
    
 0.776
LOC105889501
F-box-like/WD repeat-containing protein TBL1XR1.
    
 0.776
ENSCHAP00000004284
Retinoblastoma binding protein 5.
    
 0.769
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.