STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000037594Bestrophin 1. (726 aa)    
Predicted Functional Partners:
ENSCHAP00000048265
Glutamate-ammonia ligase (glutamine synthase) a.
    
 
 0.738
ENSCHAP00000056641
Glutamate-ammonia ligase (glutamine synthase) c.
    
 
 0.631
ENSCHAP00000010268
Lengsin, lens protein with glutamine synthetase domain.
    
   0.575
tmem98
Transmembrane protein 98.
      
 0.520
pelo
Pelota mRNA surveillance and ribosome rescue factor.
 
      0.470
ENSCHAP00000029641
Serine protease 56.
      
 0.443
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.