STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000037611Si:ch211-233a24.2. (4894 aa)    
Predicted Functional Partners:
ENSCHAP00000009576
Cell division cycle associated 8.
    
  0.819
ENSCHAP00000025311
ATPase H+ transporting V0 subunit d1.
    
  0.664
ENSCHAP00000009055
Adenosine deaminase domain containing 1 (testis-specific).
 
    
 0.579
ENSCHAP00000044613
MON2 homolog, regulator of endosome-to-Golgi trafficking.
   
    0.569
ENSCHAP00000052769
Vacuolar protein sorting 13 homolog A.
   
 
 0.531
ENSCHAP00000056721
Vacuolar protein sorting 13 homolog C.
   
 
 0.531
ENSCHAP00000035722
TBC1 domain family, member 5.
      
 0.516
ENSCHAP00000044509
MYC binding protein 2.
   
    0.508
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
   
   0.494
ENSCHAP00000007184
Lysine (K)-specific demethylase 6B, b.
    
  0.466
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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