LOC105892494 protein (Clupea harengus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105892494

Ferritin, heavy subunit-like. (178 aa)

Predicted Functional Partners:

ENSCHAP00000039721

0.784

LOC105905434

0.760

fech

0.701

ENSCHAP00000060131

0.671

ENSCHAP00000035070

0.610

ENSCHAP00000056223

0.610

hmox2

0.610

ENSCHAP00000010216

0.543

ENSCHAP00000016431

0.511

ENSCHAP00000036487

0.511

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000010216	ENSCHAP00000039721	ENSCHAP00000010216	ENSCHAP00000039721	annotation not available	Ferritin, heavy polypeptide-like 31.	0.543
ENSCHAP00000010216	LOC105892494	ENSCHAP00000010216	ENSCHAP00000037683	annotation not available	Ferritin, heavy subunit-like.	0.543
ENSCHAP00000010216	LOC105905434	ENSCHAP00000010216	ENSCHAP00000028550	annotation not available	Ferritin, lower subunit-like.	0.508
ENSCHAP00000016431	ENSCHAP00000035070	ENSCHAP00000016431	ENSCHAP00000035070	Coagulation factor VIII, procoagulant component.	Heme oxygenase 1a.	0.575
ENSCHAP00000016431	ENSCHAP00000039721	ENSCHAP00000016431	ENSCHAP00000039721	Coagulation factor VIII, procoagulant component.	Ferritin, heavy polypeptide-like 31.	0.511
ENSCHAP00000016431	ENSCHAP00000056223	ENSCHAP00000016431	ENSCHAP00000056223	Coagulation factor VIII, procoagulant component.	annotation not available	0.575
ENSCHAP00000016431	LOC105892494	ENSCHAP00000016431	ENSCHAP00000037683	Coagulation factor VIII, procoagulant component.	Ferritin, heavy subunit-like.	0.511
ENSCHAP00000016431	LOC105905434	ENSCHAP00000016431	ENSCHAP00000028550	Coagulation factor VIII, procoagulant component.	Ferritin, lower subunit-like.	0.556
ENSCHAP00000016431	fech	ENSCHAP00000016431	ENSCHAP00000032502	Coagulation factor VIII, procoagulant component.	Ferrochelatase.	0.726
ENSCHAP00000016431	hmox2	ENSCHAP00000016431	ENSCHAP00000061775	Coagulation factor VIII, procoagulant component.	Heme oxygenase 2.	0.575
ENSCHAP00000035070	ENSCHAP00000016431	ENSCHAP00000035070	ENSCHAP00000016431	Heme oxygenase 1a.	Coagulation factor VIII, procoagulant component.	0.575
ENSCHAP00000035070	ENSCHAP00000036487	ENSCHAP00000035070	ENSCHAP00000036487	Heme oxygenase 1a.	EGF-like repeats and discoidin I-like domains 3a.	0.575
ENSCHAP00000035070	ENSCHAP00000039721	ENSCHAP00000035070	ENSCHAP00000039721	Heme oxygenase 1a.	Ferritin, heavy polypeptide-like 31.	0.610
ENSCHAP00000035070	ENSCHAP00000056223	ENSCHAP00000035070	ENSCHAP00000056223	Heme oxygenase 1a.	annotation not available	0.852
ENSCHAP00000035070	LOC105892494	ENSCHAP00000035070	ENSCHAP00000037683	Heme oxygenase 1a.	Ferritin, heavy subunit-like.	0.610
ENSCHAP00000035070	LOC105905434	ENSCHAP00000035070	ENSCHAP00000028550	Heme oxygenase 1a.	Ferritin, lower subunit-like.	0.610
ENSCHAP00000035070	fech	ENSCHAP00000035070	ENSCHAP00000032502	Heme oxygenase 1a.	Ferrochelatase.	0.914
ENSCHAP00000035070	hmox2	ENSCHAP00000035070	ENSCHAP00000061775	Heme oxygenase 1a.	Heme oxygenase 2.	0.835
ENSCHAP00000036487	ENSCHAP00000035070	ENSCHAP00000036487	ENSCHAP00000035070	EGF-like repeats and discoidin I-like domains 3a.	Heme oxygenase 1a.	0.575
ENSCHAP00000036487	ENSCHAP00000039721	ENSCHAP00000036487	ENSCHAP00000039721	EGF-like repeats and discoidin I-like domains 3a.	Ferritin, heavy polypeptide-like 31.	0.511