STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usf1Upstream transcription factor 1. (290 aa)    
Predicted Functional Partners:
LOC105902063
Upstream stimulatory factor 2-like.
  
 
0.971
ENSCHAP00000013753
annotation not available
  
 
0.971
ENSCHAP00000024681
E1A binding protein p300 a.
    
 0.739
ENSCHAP00000025501
CREB binding protein a.
    
 0.739
ENSCHAP00000031900
E1A binding protein p300 b.
    
 0.739
ENSCHAP00000031370
Estrogen receptor 2a.
    
 0.711
batf
Basic leucine zipper ATF-like transcription factor.
    
 
 0.570
cebpb
CCAAT enhancer binding protein beta.
   
 0.566
ENSCHAP00000006601
Regulatory associated protein of MTOR, complex 1.
    
 
 0.548
ncoa1
Nuclear receptor coactivator 1.
    
 0.546
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.