STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
obi1ORC ubiquitin ligase 1. (584 aa)    
Predicted Functional Partners:
ENSCHAP00000014171
CCR4-NOT transcription complex, subunit 11.
    
 
 0.653
ENSCHAP00000040071
CCR4-NOT transcription complex, subunit 10.
    
 
 0.640
ENSCHAP00000013069
Origin recognition complex, subunit 3.
   
 
 0.571
ENSCHAP00000036261
Origin recognition complex, subunit 5.
    
 
 0.536
cnot1
CCR4-NOT transcription complex subunit 1.
    
   0.481
ENSCHAP00000048509
WD repeat containing, antisense to TP73.
    
   0.481
ENSCHAP00000038323
annotation not available
    
   0.474
ENSCHAP00000032508
Suppression of tumorigenicity 7.
      
 0.431
cnot3
CCR4-NOT transcription complex subunit 3.
    
   0.424
ENSCHAP00000045780
CCR4-NOT transcription complex, subunit 3b.
    
   0.424
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.