STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem178aTransmembrane protein 178A. (301 aa)    
Predicted Functional Partners:
tmem94
Transmembrane protein 94.
      
 0.540
tmem97
Transmembrane protein 97.
      
 0.533
LOC105902393
Transmembrane protein 88-like.
      
 0.528
ENSCHAP00000054855
DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57.
      
 0.521
ENSCHAP00000018524
Nicolin 1.
      
 0.519
tmem204
Transmembrane protein 204.
   
  
 0.438
ENSCHAP00000053139
FtsJ RNA 2'-O-methyltransferase 3.
      
 0.420
tmem47
Transmembrane protein 47.
      
 0.418
LOC105912477
Transmembrane protein 47-like.
      
 0.418
tmem88
Transmembrane protein 88.
      
 0.414
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.