STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000038257D4, zinc and double PHD fingers family 1. (422 aa)    
Predicted Functional Partners:
ENSCHAP00000002878
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
   
 0.965
ENSCHAP00000009078
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.
    
 0.965
ENSCHAP00000019017
D4, zinc and double PHD fingers, family 3.
  
  
0.934
ENSCHAP00000040886
annotation not available
     
0.929
ENSCHAP00000022089
AT rich interactive domain 1B (SWI1-like).
    
 0.922
ENSCHAP00000031759
annotation not available
    
 0.922
ENSCHAP00000034908
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a.
   
 0.918
LOC105889295
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3.
   
 0.918
smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
   
 0.910
ENSCHAP00000028698
AT rich interactive domain 2 (ARID, RFX-like).
    
 0.869
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.