STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000038299annotation not available (1876 aa)    
Predicted Functional Partners:
mrpl43
Mitochondrial ribosomal protein L43.
    
 
 0.489
mrpl34
Mitochondrial ribosomal protein L34.
    
 
 0.489
itgb6
Integrin subunit beta 6.
    
 0.483
ENSCHAP00000023060
Integrin, beta 4.
    
 0.483
rps27a
Ribosomal protein S27a.
    
  0.477
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.476
itgb8
Integrin subunit beta 8.
    
  0.468
mrpl13
Mitochondrial ribosomal protein L13.
    
 
 0.464
mrps10
Mitochondrial ribosomal protein S10.
    
 0.463
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.461
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.