STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105891737Forkhead box protein N5-like. (338 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
     
 0.727
mrgbp
MRG domain binding protein.
    
   0.724
yeats4
YEATS domain containing 4.
    
   0.720
ENSCHAP00000005044
Inhibitor of growth family, member 3.
    
  0.705
dmap1
DNA methyltransferase 1 associated protein 1.
    
   0.682
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
    
 0.682
ENSCHAP00000051493
Mortality factor 4 like 1.
    
   0.621
LOC105890396
Chromatin modification-related protein MEAF6.
    
   0.616
MEAF6
MYST/Esa1 associated factor 6.
    
   0.616
ENSCHAP00000015531
Bromodomain containing 8.
    
  0.587
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.