STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105890223Lipid phosphate phosphohydrolase 1-like. (282 aa)    
Predicted Functional Partners:
ENSCHAP00000012655
Lipin 1.
    
 0.910
sgpl1
Sphingosine-1-phosphate lyase 1.
    
 0.899
kdsr
3-ketodihydrosphingosine reductase.
    
 0.894
ENSCHAP00000004062
Phospholipid phosphatase 2a.
  
 
 
0.887
ENSCHAP00000058147
Si:ch73-21k16.1.
    
 0.882
cers6
Ceramide synthase 6.
    
 0.880
LOC105911479
Acid ceramidase-like.
    
 0.878
ENSCHAP00000009604
Lipin 2.
    
 0.878
ENSCHAP00000012560
Ceramide synthase 2b.
    
 0.878
LPIN2
Lipin 2.
    
 0.878
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.