STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm39RNA binding motif protein 39. (534 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b subunit 1.
   
 0.961
cdc5l
Cell division cycle 5 like.
   
 
 0.944
ENSCHAP00000026346
annotation not available
   
  0.943
ENSCHAP00000016356
DDB1 and CUL4 associated factor 15.
    
 
 0.938
rbm25
RNA binding motif protein 25.
   
0.936
LOC105896931
RNA-binding protein 25-like.
   
 0.936
ENSCHAP00000004933
U2 small nuclear RNA auxiliary factor 2a.
   
 
0.890
LOC105902020
Splicing factor U2AF 65 kDa subunit-like.
   
 
0.890
luc7l3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.872
prpf40a
pre-mRNA processing factor 40 homolog A.
   
  0.870
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.