STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000038856annotation not available (431 aa)    
Predicted Functional Partners:
ENSCHAP00000050861
Anaphase promoting complex subunit 4.
    
  0.943
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.896
aldh18a1
Aldehyde dehydrogenase 18 family member A1.
    
 0.881
ENSCHAP00000010007
Aldehyde dehydrogenase 18 family, member A1.
    
 0.881
ENSCHAP00000036965
glutamyl-tRNA(Gln) amidotransferase, subunit B.
    
 0.844
cdc16
Cell division cycle 16.
    
  0.830
ENSCHAP00000042014
Anaphase promoting complex subunit 1.
    
  0.802
gmps
Guanine monophosphate synthase.
  
 
  0.798
l3hypdh
trans-L-3-hydroxyproline dehydratase.
    
 0.772
ppat
Phosphoribosyl pyrophosphate amidotransferase.
    
  0.762
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.