STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105896174snRNA-activating protein complex subunit 1-like. (372 aa)    
Predicted Functional Partners:
ENSCHAP00000055004
annotation not available
    
 0.994
ENSCHAP00000062788
Small nuclear RNA activating complex, polypeptide 3.
    
 0.994
snapc5
Small nuclear RNA activating complex polypeptide 5.
    
 0.986
gtf2b
General transcription factor IIB.
    
 0.951
ENSCHAP00000006585
Small nuclear RNA activating complex, polypeptide 2.
    
 0.936
tbp
TATA-box binding protein.
   
 0.893
ENSCHAP00000031975
TATA box binding protein like 2.
   
 0.893
ENSCHAP00000046806
General transcription factor IIA, 2.
    
  0.880
ENSCHAP00000005063
General transcription factor IIA, 1.
    
  0.878
tbpl1
TATA-box binding protein like 1.
   
 0.866
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.