STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
txnipThioredoxin interacting protein. (382 aa)    
Predicted Functional Partners:
LOC105903933
Thioredoxin-like.
    
 0.978
TXN
Thioredoxin-like.
    
 0.956
txn2
Thioredoxin 2.
    
 0.940
ENSCHAP00000052732
Itchy E3 ubiquitin protein ligase a.
    
 
 0.930
ENSCHAP00000047655
annotation not available
    
 0.919
LOC105901470
Thioredoxin-interacting protein-like.
  
  
 
0.851
ENSCHAP00000031726
annotation not available
     
 0.773
ENSCHAP00000047229
Protein tyrosine phosphatase non-receptor type 6.
    
   0.684
ptpn11
Protein tyrosine phosphatase non-receptor type 11.
    
   0.684
LOC105898973
Tyrosine-protein phosphatase non-receptor type 11-like.
    
   0.684
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.