STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000039427pre-B-cell leukemia homeobox interacting protein 1b. (948 aa)    
Predicted Functional Partners:
ENSCHAP00000056195
WD repeat domain 18.
   
 0.614
ENSCHAP00000031330
Rhomboid, veinlet-like 3 (Drosophila).
    
  0.599
RHBDL3
Rhomboid like 3.
    
  0.599
tex10
Testis expressed 10.
    
 0.597
ENSCHAP00000006597
Pescadillo.
   
 0.588
lenep
Lens epithelial protein.
      
 0.539
CHRNA9
Neuronal acetylcholine receptor subunit alpha-9-II-like.
      
 0.528
ENSCHAP00000037787
Centromere protein N.
    
  0.498
ENSCHAP00000002116
annotation not available
   
  0.497
rps14
Ribosomal protein S14.
   
  0.497
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.