STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000039571annotation not available (1006 aa)    
Predicted Functional Partners:
itgb6
Integrin subunit beta 6.
   
 0.920
itgb8
Integrin subunit beta 8.
    
 0.919
ENSCHAP00000010301
Integrin, beta 1b.
   
 0.915
itgb5
Integrin subunit beta 5.
   
 0.897
LOC105890626
filamin-A-like.
   
 0.873
ENSCHAP00000023060
Integrin, beta 4.
   
 0.869
ENSCHAP00000021013
Integrin beta 3a.
   
 0.858
ENSCHAP00000056892
Integrin beta 3b.
   
 0.858
lamc1
Laminin subunit gamma 1.
    
 0.852
tnr
Tenascin R.
    
 0.840
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.