STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000040019Minamoto. (774 aa)    
Predicted Functional Partners:
ENSCHAP00000062081
REC8 meiotic recombination protein b.
     
 0.611
ENSCHAP00000030450
YTH domain containing 1.
    
 
 0.599
LOC105904922
Double-strand-break repair protein rad21 homolog.
     
 0.546
LOC105891922
Double-strand-break repair protein rad21 homolog.
     
 0.546
ENSCHAP00000043880
RAD21 cohesin complex component like 1.
     
 0.546
SYDE1
Synapse defective Rho GTPase homolog 1.
      
 0.536
ENSCHAP00000017223
RNA binding motif protein 46.
      
 0.479
ENSCHAP00000032945
5'-3' exoribonuclease 1.
    
 
 0.452
ENSCHAP00000056423
Storkhead box 2a.
      
 0.452
ENSCHAP00000017321
DEAH (Asp-Glu-Ala-His) box polypeptide 29.
    
 
 0.434
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.