STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000040035Importin 9. (1040 aa)    
Predicted Functional Partners:
sf3b3
Splicing factor 3b subunit 3.
   
    0.778
LOC105904511
Nucleosome assembly protein 1-like 4.
   
 
 0.704
ENSCHAP00000031804
Nucleosome assembly protein 1-like 4b.
   
 
 0.704
nap1l1
Nucleosome assembly protein 1 like 1.
   
 
 0.700
tbp
TATA-box binding protein.
    
 
 0.654
ENSCHAP00000031975
TATA box binding protein like 2.
    
 
 0.654
umps
Uridine monophosphate synthetase.
   
 
  0.644
ENSCHAP00000062060
Importin 4.
   
 
 0.640
H2AZ1
Histone H2A.Z.
    
 
 0.624
LOC105889415
Histone H2A.V.
    
 
 0.624
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.